-
Notifications
You must be signed in to change notification settings - Fork 18
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Call2plink sub-workflow #41
base: dev
Are you sure you want to change the base?
Conversation
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Added general suggestions - will review again when its a bit more complete.
process bedify { | ||
|
||
input: | ||
set file(ped), file(map) |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
set file(ped), file(map) | |
tuple file(ped), file(map) |
def samplesize = params.samplesize | ||
def idpat = params.idpat | ||
def output = report.baseName |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
def samplesize = params.samplesize | |
def idpat = params.idpat | |
def output = report.baseName | |
def samplesize = params.samplesize | |
def idpat = params.idpat | |
def output = report.baseName |
def output = report.baseName | ||
""" | ||
hostname | ||
topbottom.py $array $report $samplesize '$idpat' $output |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Davi, we'd also need to add this script to the bin
Hey, There 👋
This PR aims to provide a basework for the call2plink sub-workflow
🚧 WIP 🚧