表現型のエンコーディング

[mitsuyoshi-yamazaki]

• 分析 - Collaboratory

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課題

繰り返さないパターンの検出ができない

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• GAの前にパターンをスコアリングする #103
• 表現型を可視化・分析するためにエンコードする

http://localhost:8080/pages/drawer.html?system.run=0&system.auto_download=0&s.l=100&d.c=transition&s.r=A:-88,A,-152,A
A:-88,A,-152,A
※ 枝の長い順

[Log] calculateTransition() A:-88,A,-152,A
[Log] (0A,-88A^3,-152A,-88A,-152A,-88A^2,-152A,-88A,-152A^15)
[Log] (0A,-88A^3,-152A,-88A,-152A,-88A^2,-152A^2,-88A^3,-152A^12)
[Log] (0A,-88A^3,-152A,-88A,-152A,-88A^2,-152A^17)
[Log] (0A,-88A^3,(-152A,-88A)^2,(-152A,-88A^2)^2,-152A^12)
[Log] (0A,-88A^3,(-152A,-88A)^2,-152A,-88A^2,-152A,-88A,-152A,-88A^2,(-152A,-88A)^2,-152A,-88A^2,-152A^2,-88A)
[Log] (0A,-88A^3,(-152A,-88A)^2,-152A,-88A^2,-152A,-88A,-152A,-88A^2,(-152A,-88A)^2,-152A,-88A^2,-152A^3)
[Log] (0A,-88A^3,(-152A,-88A)^2,-152A,-88A^2,-152A,-88A,-152A,-88A^2,(-152A,-88A)^3,-152A,-88A^3)
[Log] (0A,-88A^3,(-152A,-88A)^2,-152A,-88A^2,-152A,-88A,-152A,-88A^2,(-152A,-88A)^3,-152A,-88A^2,-152A)
[Log] (0A,-88A^3,(-152A,-88A)^2,-152A,-88A^2,-152A,-88A,-152A,-88A^2,(-152A,-88A)^3,-152A^4)
[Log] (0A,-88A^3,(-152A,-88A)^2,-152A,-88A^2,-152A,-88A,-152A,-88A^2,(-152A,-88A)^2,-152A^6)
[Log] (0A,-88A^3,(-152A,-88A)^2,(-152A,-88A^2,-152A,-88A)^2,-152A^8)
...

いつもの

ルールA:-88,A,-152,A
発現パターン一覧

[Log] (2-18, 11894): "-88A"
[Log] (2-5, 6245): "-240A,-88A"
[Log] (2-25, 5561): "-240A"
[Log] (2-3, 1095): "-240A,-88A^2"
[Log] (2-3, 594): "-240A,-88A^2,(-240A,-88A)^2"
[Log] (2-3, 478): "-240A,-88A^2,-240A,-88A"
[Log] (2-2, 13): "(-240A,-88A)^2,-240A,-88A^2,-240A,-88A,-240A,-88A^2"
[Log] (2-2, 6): "(-240A,-88A)^3,-240A,-88A^2"
[Log] (2-2, 4): "-240A^2,-88A^2"

(<最小繰り返し回数>-<最大繰り返し回数>, 発現数): パターン

-88A ：正方形のパターン
-152A ：正三角形のパターン

ルール（genotype）上は A→-88A と A→-152A の発現頻度は等しいが、描画すると（phenotype）前者の方が倍発現している