Skip to content
View applicativesystem's full-sized avatar
1 follower · 38 following

Block or report applicativesystem

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
applicativesystem/README.md
  • Algorithmic Bioinformatics, Data Analysis, Deep Learning, System Administration
  • Curriculum Vitae | References | Scopus | Web of Science
  • European Union Skilled Blaue Karte.
  • Lead data analyst/bioinformatician, developed, establishment and managed computing clusters in all the employment.
  • Extremely collaborative,communicative, approachable, motivated, solution oriented, responsive, and initiative taker.
  • All code and ideas concieved and written by me unless specified.
  • Programming: Previously used C++ mainly. Currently using Python, GO, RUST.
  • Deep Learning/ Web: PyTorch, Tensorflow, XGBoost, Scikit-learn, Streamlit, Django, Flask, HUGO, HTMx, Rocket, Actix, Leptos.
  • System HPC | Database: Markdown, Typst, Grafana, LDAP, Bash, Systemd, Apptainer, Docker, SQlite3, PostgresSQL, SLURM.
  • 2023-2024: Universitat Potsdam,Germany, I Benchmarked PacBioHifi, GO and RUST including GraphQL,Web-RUST.
  • 2021-2023: Python Machine/Deep learning.
  • 2020-2021: Finnish Museum of Natural History, Finland. I completed genome assembly, annotations, markers genes, ITS, and phylogenomics of over 500 fungal species using NextSeq.
  • 2017-2021: Finnish Museum of Natural History, Finland, where I completed pacbio sequencing, assembly, annotations, organelle genomes and evolutionary/phylogenomic/comparative genomics approaches of lower plants Coleochaete orbicularis, Blasia pusilla, Chaetospiridium orbicularis, Polytrichum commune, Mallomonas, and Cryptomonas. Additionally, I worked for collaboration with Edinburgh UK, to analyse the PAFTOL species and the chloroplast genomes of the Ambrosia clade from Norway.
  • 2016-2017: University of Connecticut, USA, where I analyzed the Douglas fir genome from genome annotation to the phylogenomics.
  • 2014–2016: University of Technology, Sydney, Australia, where I developed computational methods for seagrasses.
  • 2011-2014: Fondazione Edmund Mach, Italy, where I developed and analyzed bioinformatics methods for nuclear and organelle genomes, metagenomics from fungal and bacterial both whole genome as well as 16S and ITS sequencing.

Pinned Loading

  1. python-tairaccession python-tairaccession Public

    python package for arabidopsis genome analysis

    Python

  2. rust-samtools-genomeview rust-samtools-genomeview Public

    rust-samtools-genomeview

    Rust

  3. rust-alignment-viewer rust-alignment-viewer Public

    rust embedded approach for genome alignments

    Rust

  4. go-multi-longread-canvas go-multi-longread-canvas Public

    multipattern trimmomatic for long reads

    Go

  5. rust-bedtools-multipangenome rust-bedtools-multipangenome Public

    rust bedtools multi-pangenome call

    Rust

  6. rust-bedtools-pangenome-vcf rust-bedtools-pangenome-vcf Public

    rust pangenome bedtools vcf

    Rust