Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Dont fail if transgene finds zero actionable mutations (resolves #214) #289

Open
wants to merge 1 commit into
base: master
Choose a base branch
from
Open

Dont fail if transgene finds zero actionable mutations (resolves #214) #289

wants to merge 1 commit into from

Conversation

davidstew
Copy link
Collaborator

Resolves #214

If provided with an empty VCF file, Transgene will return None. If Transgene returns None, all subsequent tools which rely on Transgene’s return value return None as well.

@ghost ghost assigned davidstew May 21, 2018
@ghost ghost added the in progress label May 21, 2018
Handle cases with no actionable mutations (resolves #214)
9726a95 
resolves #214

ProTECT now fails gracefully if Transgene receives an empty file,
 Transgene finds no actionable mutations, or merge_mhc_peptide_calls
produces no peptides. This is done by propagating a None value.
@davidstew davidstew force-pushed the 214-dont-fail-if-transgene-finds-zero-actionable-mutations branch from 17e489b to 9726a95 Compare May 26, 2018 02:26
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees

@davidstew davidstew

Labels
in progress
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
1 participant
@davidstew